# Genomics and Phylogenetic Studies

**Type:** Topics  
**Canonical URL:** https://scholariq.org/topics/genomics-and-phylogenetic-studies/

## Facts

| Field | Value |
| --- | --- |
| Description | This cluster of papers focuses on the statistical analysis, alignment, and annotation of RNA sequencing data, including methods for transcript quantification, phylogenetic analysis, genome assembly, and quality assessment in functional genomics. It also covers tools for sequence variation analysis and metagenomics assembly. |
| Domain | Life Sciences |
| Field | Biochemistry, Genetics and Molecular Biology |
| OpenAlex ID | t10015 |
| Works | 207 |

## Topic papers all

Showing 15 of 207.

- [A global reference for human genetic variation](https://scholariq.org/papers/a-global-reference-for-human-genetic-variation/)
- [ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data](https://scholariq.org/papers/annovar-functional-annotation-of-genetic-variants-from-high-throughput/)
- [The Sequence of the Human Genome](https://scholariq.org/papers/the-sequence-of-the-human-genome/)
- [The RAST Server: Rapid Annotations using Subsystems Technology](https://scholariq.org/papers/the-rast-server-rapid-annotations-using-subsystems-technology/)
- [The mutational constraint spectrum quantified from variation in 141,456 humans](https://scholariq.org/papers/the-mutational-constraint-spectrum-quantified-from-variation-in-141-456-humans/)
- [A Rapid Bootstrap Algorithm for the RAxML Web Servers](https://scholariq.org/papers/a-rapid-bootstrap-algorithm-for-the-raxml-web-servers/)
- [Roary: rapid large-scale prokaryote pan genome analysis](https://scholariq.org/papers/roary-rapid-large-scale-prokaryote-pan-genome-analysis/)
- [The Genome Sequence of <i>Drosophila melanogaster</i>](https://scholariq.org/papers/the-genome-sequence-of-i-drosophila-melanogaster-i/)
- [A Draft Sequence of the Rice Genome ( <i>Oryza sativa</i> L. ssp. <i>indica</i> )](https://scholariq.org/papers/a-draft-sequence-of-the-rice-genome-i-oryza-sativa-i-l-ssp-i-indica-i/)
- [The B73 Maize Genome: Complexity, Diversity, and Dynamics](https://scholariq.org/papers/the-b73-maize-genome-complexity-diversity-and-dynamics/)
- [Functional Characterization of the <i>S. cerevisiae</i> Genome by Gene Deletion and Parallel Analysis](https://scholariq.org/papers/functional-characterization-of-the-i-s-cerevisiae-i-genome-by-gene-deletion-and/)
- [A survey of best practices for RNA-seq data analysis](https://scholariq.org/papers/a-survey-of-best-practices-for-rna-seq-data-analysis/)
- [A Draft Sequence of the Rice Genome ( <i>Oryza sativa</i> L. ssp. <i>japonica</i> )](https://scholariq.org/papers/a-draft-sequence-of-the-rice-genome-i-oryza-sativa-i-l-ssp-i-japonica-i/)
- [The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression](https://scholariq.org/papers/the-complete-nucleotide-sequence-of-the-tobacco-chloroplast-genome-its-gene/)
- [Evolution of genes and genomes on the Drosophila phylogeny](https://scholariq.org/papers/evolution-of-genes-and-genomes-on-the-drosophila-phylogeny/)

## Topic primary papers

Showing 15 of 73.

- [The Sequence of the Human Genome](https://scholariq.org/papers/the-sequence-of-the-human-genome/)
- [The RAST Server: Rapid Annotations using Subsystems Technology](https://scholariq.org/papers/the-rast-server-rapid-annotations-using-subsystems-technology/)
- [A Rapid Bootstrap Algorithm for the RAxML Web Servers](https://scholariq.org/papers/a-rapid-bootstrap-algorithm-for-the-raxml-web-servers/)
- [Roary: rapid large-scale prokaryote pan genome analysis](https://scholariq.org/papers/roary-rapid-large-scale-prokaryote-pan-genome-analysis/)
- [The Genome Sequence of <i>Drosophila melanogaster</i>](https://scholariq.org/papers/the-genome-sequence-of-i-drosophila-melanogaster-i/)
- [A Draft Sequence of the Rice Genome ( <i>Oryza sativa</i> L. ssp. <i>indica</i> )](https://scholariq.org/papers/a-draft-sequence-of-the-rice-genome-i-oryza-sativa-i-l-ssp-i-indica-i/)
- [A survey of best practices for RNA-seq data analysis](https://scholariq.org/papers/a-survey-of-best-practices-for-rna-seq-data-analysis/)
- [A Draft Sequence of the Rice Genome ( <i>Oryza sativa</i> L. ssp. <i>japonica</i> )](https://scholariq.org/papers/a-draft-sequence-of-the-rice-genome-i-oryza-sativa-i-l-ssp-i-japonica-i/)
- [The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression](https://scholariq.org/papers/the-complete-nucleotide-sequence-of-the-tobacco-chloroplast-genome-its-gene/)
- [Evolution of genes and genomes on the Drosophila phylogeny](https://scholariq.org/papers/evolution-of-genes-and-genomes-on-the-drosophila-phylogeny/)
- [Evolutionary and Biomedical Insights from the Rhesus Macaque Genome](https://scholariq.org/papers/evolutionary-and-biomedical-insights-from-the-rhesus-macaque-genome/)
- [Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4](https://scholariq.org/papers/extending-and-improving-metagenomic-taxonomic-profiling-with-uncharacterized/)
- [The sequence and de novo assembly of the giant panda genome](https://scholariq.org/papers/the-sequence-and-de-novo-assembly-of-the-giant-panda-genome/)
- [MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization](https://scholariq.org/papers/mitoz-a-toolkit-for-animal-mitochondrial-genome-assembly-annotation-and/)
- [Re-evaluating prokaryotic species](https://scholariq.org/papers/re-evaluating-prokaryotic-species/)

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Source: ScholarIQ — public research metadata, principally OpenAlex. See https://scholariq.org/sources/ for provenance and https://scholariq.org/methodology/ for what these figures mean.