# Microbial Metabolic Engineering and Bioproduction

**Type:** Topics  
**Canonical URL:** https://scholariq.org/topics/microbial-metabolic-engineering-and-bioproduction/

## Facts

| Field | Value |
| --- | --- |
| Description | This cluster of papers focuses on the field of metabolic engineering and synthetic biology, with an emphasis on genome-scale models, constraint-based models, and their application in biofuel production, microbial metabolism, pathway reconstruction, and biorefineries. The papers cover topics such as flux balance analysis, high-quality genome-scale metabolic reconstructions, programming cells for accelerated evolution, and the use of synthetic protein scaffolds to control metabolic flux. |
| Domain | Life Sciences |
| Field | Biochemistry, Genetics and Molecular Biology |
| OpenAlex ID | t10932 |
| Works | 101 |

## Topic papers all

Showing 15 of 101.

- [The RAST Server: Rapid Annotations using Subsystems Technology](https://scholariq.org/papers/the-rast-server-rapid-annotations-using-subsystems-technology/)
- [Functional profiling of the Saccharomyces cerevisiae genome](https://scholariq.org/papers/functional-profiling-of-the-saccharomyces-cerevisiae-genome/)
- [Metabolomics – the link between genotypes and phenotypes](https://scholariq.org/papers/metabolomics-the-link-between-genotypes-and-phenotypes-3/)
- [The explicit linear quadratic regulator for constrained systems](https://scholariq.org/papers/the-explicit-linear-quadratic-regulator-for-constrained-systems/)
- [Metabolomics — the link between genotypes and phenotypes](https://scholariq.org/papers/metabolomics-the-link-between-genotypes-and-phenotypes-2/)
- [Advanced bacterial genetics](https://scholariq.org/papers/advanced-bacterial-genetics/)
- [Metabolite profiling for plant functional genomics](https://scholariq.org/papers/metabolite-profiling-for-plant-functional-genomics/)
- [Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network](https://scholariq.org/papers/integrated-genomic-and-proteomic-analyses-of-a-systematically-perturbed/)
- [A Map of the Interactome Network of the Metazoan <i>C. elegans</i>](https://scholariq.org/papers/a-map-of-the-interactome-network-of-the-metazoan-i-c-elegans-i/)
- [Gene Regulation at the Single-Cell Level](https://scholariq.org/papers/gene-regulation-at-the-single-cell-level/)
- [Predicting Network Activity from High Throughput Metabolomics](https://scholariq.org/papers/predicting-network-activity-from-high-throughput-metabolomics/)
- [Fusion PCR and gene targeting in Aspergillus nidulans](https://scholariq.org/papers/fusion-pcr-and-gene-targeting-in-aspergillus-nidulans/)
- [Experimental Determination and System Level Analysis of Essential Genes in <i>Escherichia coli</i> MG1655](https://scholariq.org/papers/experimental-determination-and-system-level-analysis-of-essential-genes-in-i/)
- [Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology](https://scholariq.org/papers/pathway-tools-version-13-0-integrated-software-for-pathway-genome-informatics/)
- [Lessons from the Genome Sequence of<i>Neurospora crassa</i>: Tracing the Path from Genomic Blueprint to Multicellular Organism](https://scholariq.org/papers/lessons-from-the-genome-sequence-of-i-neurospora-crassa-i-tracing-the-path-from/)

## Topic primary papers

Showing 15 of 31.

- [Experimental Determination and System Level Analysis of Essential Genes in <i>Escherichia coli</i> MG1655](https://scholariq.org/papers/experimental-determination-and-system-level-analysis-of-essential-genes-in-i/)
- [Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology](https://scholariq.org/papers/pathway-tools-version-13-0-integrated-software-for-pathway-genome-informatics/)
- [Metabolic engineering of <i>Escherichia coli</i> for the production of <scp>l</scp> -valine based on transcriptome analysis and <i>in silico</i> gene knockout simulation](https://scholariq.org/papers/metabolic-engineering-of-i-escherichia-coli-i-for-the-production-of-scp-l-scp/)
- [Systems metabolic engineering of Escherichia coli for L‐threonine production](https://scholariq.org/papers/systems-metabolic-engineering-of-escherichia-coli-for-l-threonine-production/)
- [Influence of the nitrogen source on Saccharomyces cerevisiae anaerobic growth and product formation](https://scholariq.org/papers/influence-of-the-nitrogen-source-on-saccharomyces-cerevisiae-anaerobic-growth/)
- [Engineering <i>Escherichia coli</i> coculture systems for the production of biochemical products](https://scholariq.org/papers/engineering-i-escherichia-coli-i-coculture-systems-for-the-production-of/)
- [Metabolic engineering of yeast for production of fuels and chemicals](https://scholariq.org/papers/metabolic-engineering-of-yeast-for-production-of-fuels-and-chemicals/)
- [<i>In Silico</i> Identification of Gene Amplification Targets for Improvement of Lycopene Production](https://scholariq.org/papers/i-in-silico-i-identification-of-gene-amplification-targets-for-improvement-of/)
- [Systems biotechnology for strain improvement](https://scholariq.org/papers/systems-biotechnology-for-strain-improvement/)
- [Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology](https://scholariq.org/papers/pathway-tools-version-19-0-update-software-for-pathway-genome-informatics-and/)
- [Flux balance analysis in the era of metabolomics](https://scholariq.org/papers/flux-balance-analysis-in-the-era-of-metabolomics/)
- [Metabolic engineering of Corynebacterium glutamicum for L-arginine production](https://scholariq.org/papers/metabolic-engineering-of-corynebacterium-glutamicum-for-l-arginine-production/)
- [The synthesis of n-caproate from lactate: a new efficient process for medium-chain carboxylates production](https://scholariq.org/papers/the-synthesis-of-n-caproate-from-lactate-a-new-efficient-process-for-medium/)
- [Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks](https://scholariq.org/papers/dynamic-analysis-of-integrated-signaling-metabolic-and-regulatory-networks/)
- [Engineering highly functional thermostable proteins using ancestral sequence reconstruction](https://scholariq.org/papers/engineering-highly-functional-thermostable-proteins-using-ancestral-sequence/)

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Source: ScholarIQ — public research metadata, principally OpenAlex. See https://scholariq.org/sources/ for provenance and https://scholariq.org/methodology/ for what these figures mean.