Single-cell and spatial transcriptomics

TopicLeading institutions, researchers & key papers

This cluster of papers focuses on the comprehensive integration and analysis of single-cell transcriptomic data, covering topics such as cell types, spatial profiling, lineage tracking, data integration, gene expression, and cell heterogeneity. The research explores various technologies and computational methods to study the transcriptomic landscape at the single-cell level.

199

Works

IDs:OpenAlex

How has Single-cell and spatial transcriptomics's publication output changed over time?

ScholarIQpublication output · 2015–2022

Output grew0% over the shown period — from 1 works in 2015 to 1 in 2022.

201520182019202020212022

What are the most-cited papers on Single-cell and spatial transcriptomics?

ScholarIQmost cited works

Fast, sensitive and accurate integration of single-cell data with Harmony

Ilya Korsunsky, Nghia Millard, Jean Fan, Kamil Slowikowski, Fan Zhang, Kevin Wei, Yuriy Baglaenko, Michael B. Brenner, Po‐Ru Loh, Soumya Raychaudhuri

S127827428. 201910,925 CitationsOPEN ACCESS

Determining cell type abundance and expression from bulk tissues with digital cytometry

Aaron M. Newman, Chloé B. Steen, Chih Long Liu, Andrew J. Gentles, Aadel A. Chaudhuri, Florian Scherer, Michael S. Khodadoust, Mohammad Shahrokh Esfahani, Bogdan Luca, David F. Steiner, Maximilian Diehn, Ash A. Alizadeh

S106963461. 20194,977 Citations

RNA velocity of single cells

Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria Eleni Kastriti, Peter Lönnerberg, Alessandro Furlan, Jean Fan, Lars E. Borm, Zehua Liu, David van Bruggen, Jimin Guo, Xiaoling He, Roger A. Barker, Erik Sundström, Gonçalo Castelo‐Branco, Patrick Cramer, Igor Adameyko, Sten Linnarsson, Peter V. Kharchenko

Nature. 20184,595 CitationsOPEN ACCESS

The prognostic landscape of genes and infiltrating immune cells across human cancers

Andrew J. Gentles, Aaron M. Newman, Chih Long Liu, Scott V. Bratman, Weiguo Feng, Dongkyoon Kim, Viswam S. Nair, Yue Xu, Amanda Khuong, Chuong D. Hoang, Maximilian Diehn, Robert B. West, Sylvia K. Plevritis, Ash A. Alizadeh

Nature Medicine. 20153,290 CitationsOPEN ACCESS

Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression

Urmo Võsa, Annique Claringbould, Harm-Jan Westra, Marc Jan Bonder, Patrick Deelen, Biao Zeng, Holger Kirsten, Ashis Saha, Roman Kreuzhuber, Seyhan Yazar, Harm Brugge, Roy Oelen, Dylan H. de Vries, Monique G.P. van der Wijst, Silva Kasela, Natalia Pervjakova, Isabel Alves, Marie-Julie Favé, Mawussé Agbessi, Mark Christiansen, Rick Jansen, Ilkka Seppälä, Tong Lin, Alexander Teumer, Katharina Schramm, Gibran Hemani, Joost Verlouw, Hanieh Yaghootkar, Reyhan Sönmez Flitman, Andrew Brown, Viktorija Kukushkina, Anette Kalnapenkis, Sina Rüeger, Eleonora Porcu, Jaanika Kronberg, Johannes Kettunen, Bernett Lee, Futao Zhang, Ting Qi, José Alquicira-Hernández, Wibowo Arindrarto, Frank Beutner, Peter A.C. ’t Hoen, Joyce B. J. van Meurs, Jenny van Dongen, Maarten van Iterson, Morris A. Swertz, Marc Jan Bonder, Julia Dmitrieva, Mahmoud Elansary, Benjamin P. Fairfax, Michel Georges, Bastiaan T. Heijmans, Alex W. Hewitt, Mika Kähönen, Yungil Kim, Julian C. Knight, Péter Kovács, Knut Krohn, Shuang� Li, Markus Loeffler, Urko M. Marigorta, Hailang Mei, Yukihide Momozawa, Martina Müller‐Nurasyid, Matthias Nauck, Michel G. Nivard, Brenda W.J.H. Penninx, Jonathan K. Pritchard, Olli T. Raitakari, Olaf Rötzschke, P. Eline Slagboom, Coen D.A. Stehouwer, Michael Stümvoll, Patrick Sullivan, Peter A.C. ’t Hoen, Joachim Thiery, Anke Tönjes, Jenny van Dongen, Maarten van Iterson, Jan H. Veldink, Uwe Völker, Robert Warmerdam, Cisca Wijmenga, Morris A. Swertz, Anand Kumar Andiappan, Grant W. Montgomery, Samuli Ripatti, Markus Perola, Zoltán Kutalik, Emmanouil T. Dermitzakis, Sven Bergmann, Timothy M. Frayling, Joyce B. J. van Meurs, Holger Prokisch, Habibul Ahsan, Brandon L. Pierce, Terho Lehtimäki, Dorret I. Boomsma, Bruce M. Psaty

S137905309. 20212,249 CitationsOPEN ACCESS